PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10163039g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 235aa    MW: 27365.3 Da    PI: 6.5635
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10163039g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC168.58.1e-53621661102
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql++fw++q   +e+ ++fk+h+lPlarikki+k+dedvkmisaeaPvl+skacelfileltlrswlh+eenkrrtl+++dia a++r d+ d
  MA_10163039g0010  62 QLQMFWQQQmqeMEQIAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLD 154
                       89*****99888999****************************************************************************** PP

             NF-YC  91 flvdivprdelk 102
                       fl+divprde+k
  MA_10163039g0010 155 FLLDIVPRDEVK 166
                       *********875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.51E-3148156IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.0E-3678147IPR009072Histone-fold
PfamPF008087.1E-2184147IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEGKYPHLQS SPSPSVSHGP SSLMHNSIFQ QQQPQMPMQH HQQQLQGSMQ PHLHYMQIQK  60
QQLQMFWQQQ MQEMEQIAEF KQHQLPLARI KKIMKSDEDV KMISAEAPVL FSKACELFIL  120
ELTLRSWLHT EENKRRTLQR NDIAGAISRG DVLDFLLDIV PRDEVKDEEY GGHWPGIPHA  180
ESMSYGGIHF PLMHAQPYHH NLNPDVMTAQ QTMSQQLMSQ QPLMPDQQLM YQPPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C5e-426316219119HapE
4g91_C5e-426316219119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140RRTLQRN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0850830.0EF085083.1 Picea sitchensis clone WS0296_J03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011622041.15e-74PREDICTED: uncharacterized protein LOC18430586
SwissprotQ9FMV51e-61NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA9NUT01e-172A9NUT0_PICSI; Putative uncharacterized protein
STRINGPP1S315_9V6.31e-76(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.23e-53nuclear factor Y, subunit C4